Protéomique et Spectrométrie de Masse des Biomolécules


Bioinformatique

 

Le tableau ci-dessous présente quelques logiciels développés au sein du laboratoire. Tous ces programmes ont été développés dans le langage Perl et sont donc en théorie utilisables sur tous les environnements supportant ce langage (cependant la majorité n'ont été testé que sous Microsoft Windows XP/2003).

Developped software

NameDescription
Applications
 
MFPaQ
[details]
Mascot File Parsing and Quantification :
an integrated software for proteomic data analysis.
Spok
[details]
A program for product order management.
 
Librairies
 
SpectroRawData
[details]
A cross-platform library for reading mass spectrometer raw files.
Supported formats : .RAW (ThermoFinnigan), .mzXML
Chemistry
[details]
A library used for computing some physico-chemical parameters of a molecule (amino-acid and atomic compositions, mono-isotopic and average masses, isoelectric point...).
Statistics
[details]
A library used for computing descriptive statistics, processing ratio transformations and outliers detection.
 
Bioinformatic scripts
 
UniprotMaker
[details]
A set of scripts that can be used to produce a non-redundant version
of UNIPROT using SwissProt and TrEMBL flat files.
ProtNovo
[details]
In order to identify proteins, this script converts PepNovo sequence interpretations
into sequence tags compatible with the Mascot "Sequence Tag" search mode.
 
Other Perl scripts
 
MFPaQ
[details]
Mascot File Parsing and Quantification :
an integrated software for proteomic data analysis.